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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K9me2
wikigenes
PDBj
CellType: Primordial germ cells
ATCC
MeSH
RIKEN BRC
DRX118931
NextSeq 500 paired end sequencing of SAMD00109200 rep1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K9me2
Cell type
Cell type Class
Embryo
Cell type
Primordial germ cells
NA
NA
Attributes by original data submitter
Sample
sample_name
e13_f_9-2
antibody
H3K9me2
cell_type
primordial germ cell
dev_stage
E13.5
sex
female
Sequenced DNA Library
library_name
ChIP_e13.5_female_H3K9me2_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
29439781
Reads aligned (%)
95.4
Duplicates removed (%)
12.6
Number of peaks
174 (qval < 1E-05)
mm9
Number of total reads
29439781
Reads aligned (%)
95.3
Duplicates removed (%)
12.8
Number of peaks
182 (qval < 1E-05)
Base call quality data from
DBCLS SRA