DRX118925
NextSeq 500 paired end sequencing of SAMD00109197 rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryo
Cell type
Primordial germ cells
NA
NA

Attributes by original data submitter

Sample

sample_name
e13_f_4-3
antibody
H3K4me3
cell_type
primordial germ cell
dev_stage
E13.5
sex
female

Sequenced DNA Library

library_name
ChIP_e13.5_female_H3K4me3_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22074139
Reads aligned (%)
97.2
Duplicates removed (%)
32.9
Number of peaks
29181 (qval < 1E-05)

mm9

Number of total reads
22074139
Reads aligned (%)
97.0
Duplicates removed (%)
33.1
Number of peaks
29186 (qval < 1E-05)

Base call quality data from DBCLS SRA