DRX114708
HSVCEC-05284 ChIP-Seq H3K27ac

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Superior vena cava endothelial cells
NA
NA

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC76
age
19
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
cell_type
superior vena cava endothelial cells
collection_date
2016-03-16
dev_stage
adult
disease
Anoxia
donor_id
JTK053
ethnicity
Hispanic
ihec ref
JTK053
label
IHEC76
lot number
5284
sample_type
Primary Cell
sex
female

Sequenced DNA Library

library_name
WadaLab-IHEC76-C1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44447896
Reads aligned (%)
99.3
Duplicates removed (%)
3.2
Number of peaks
12957 (qval < 1E-05)

hg19

Number of total reads
44447896
Reads aligned (%)
98.9
Duplicates removed (%)
3.8
Number of peaks
12899 (qval < 1E-05)

Base call quality data from DBCLS SRA