DRX114698
HAoEC-04902 ChIP-Seq Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
HAEC
Primary Tissue
Aorta
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC66
age
19
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
cell_type
aortic endothelial cell
collection_date
2016-08-15
dev_stage
adult
disease
Head Trauma
donor_id
JTK049
ethnicity
Caucasian
ihec ref
JTK049
label
IHEC66
lot number
4902
sample_type
Primary Cell
sex
male

Sequenced DNA Library

library_name
WadaLab-IHEC66-I2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44786409
Reads aligned (%)
98.9
Duplicates removed (%)
4.7
Number of peaks
1121 (qval < 1E-05)

hg19

Number of total reads
44786409
Reads aligned (%)
98.0
Duplicates removed (%)
5.9
Number of peaks
1126 (qval < 1E-05)

Base call quality data from DBCLS SRA