Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
HAEC
Primary Tissue
Aorta
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC60
age
36
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
cell_type
Human Aortic Endothelial Cells
collection_date
2015-03-15
donor_id
JTK040
ethnicity
Native American
health_state
dead
ihec ref
JTK040
label
IHEC60
lot number
4554
sample_type
Primary Cell
sex
female
tissue_type
the endothelium of blood vessels

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
40156302
Reads aligned (%)
99.0
Duplicates removed (%)
3.7
Number of peaks
1279 (qval < 1E-05)

hg19

Number of total reads
40156302
Reads aligned (%)
98.2
Duplicates removed (%)
5.2
Number of peaks
1314 (qval < 1E-05)

Base call quality data from DBCLS SRA