DRX114673
HGSVEC-03112 ChIP-Seq H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Saphenous vein endothelial cells
NA
NA

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC54
age
23
biomaterial_type
Primary Cell
cell_type
great saphenous vein endothelial cell
collection_date
2003-08-14
dev_stage
adult
disease
Blunt Force Trauma (BFT)
donor_id
JTK045
ihec ref
JTK045
label
IHEC54
lot number
3112
sample_type
Primary Cell
sex
male

Sequenced DNA Library

library_name
WadaLab-IHEC54-B1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25390150
Reads aligned (%)
99.0
Duplicates removed (%)
3.9
Number of peaks
14281 (qval < 1E-05)

hg19

Number of total reads
25390150
Reads aligned (%)
98.2
Duplicates removed (%)
5.2
Number of peaks
14270 (qval < 1E-05)

Base call quality data from DBCLS SRA