DRX114667
HCCA-CRIF2Q-4 ChIP-Seq Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Carotid artery endothelial cells
NA
NA

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC52
age
23
biomaterial_provider
Brain Attack Center, Ota Memorial Hospital, Hiroshima, Japan
biomaterial_type
Primary Cell
cell_type
endothelial cell of artery (common carotid)
collection_date
2016-12-14
dev_stage
adult
disease
Blunt Force Trauma (BFT)
donor_id
JTK034
ethnicity
Japanese
ihec ref
JTK034
label
IHEC52
lot number
CRIF2Q-4
sample_type
Primary Cell
sex
male

Sequenced DNA Library

library_name
WadaLab-IHEC52-I1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33178999
Reads aligned (%)
99.0
Duplicates removed (%)
4.8
Number of peaks
1158 (qval < 1E-05)

hg19

Number of total reads
33178999
Reads aligned (%)
98.3
Duplicates removed (%)
6.4
Number of peaks
1134 (qval < 1E-05)

Base call quality data from DBCLS SRA