Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Saphenous vein endothelial cells
NA
NA

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC51
age
23
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
cell_type
saphenous vein endothelial cell
collection_date
2013-03-23
dev_stage
adult
disease
Blunt Force Trauma (BFT)
donor_id
JTK066
ihec ref
JTK066
label
IHEC51
lot number
4518
sample_type
Primary Cell
sex
male

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
26485322
Reads aligned (%)
99.1
Duplicates removed (%)
4.9
Number of peaks
981 (qval < 1E-05)

hg19

Number of total reads
26485322
Reads aligned (%)
98.2
Duplicates removed (%)
6.4
Number of peaks
1040 (qval < 1E-05)

Base call quality data from DBCLS SRA