DRX114662
HSVEC-04518 ChIP-Seq H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Saphenous vein endothelial cells
NA
NA

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC51
age
23
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
cell_type
saphenous vein endothelial cell
collection_date
2013-03-23
dev_stage
adult
disease
Blunt Force Trauma (BFT)
donor_id
JTK066
ihec ref
JTK066
label
IHEC51
lot number
4518
sample_type
Primary Cell
sex
male

Sequenced DNA Library

library_name
WadaLab-IHEC51-B2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33561282
Reads aligned (%)
99.2
Duplicates removed (%)
7.0
Number of peaks
18870 (qval < 1E-05)

hg19

Number of total reads
33561282
Reads aligned (%)
98.4
Duplicates removed (%)
8.0
Number of peaks
18849 (qval < 1E-05)

Base call quality data from DBCLS SRA