DRX114649
HCCA-CRIF2L-3 ChIP-Seq H3K27ac

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Carotid artery endothelial cells
NA
NA

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC45
age
23
biomaterial_provider
Brain Attack Center, Ota Memorial Hospital, Hiroshima, Japan
biomaterial_type
Primary Cell
cell_type
endothelial cell of artery (common carotid)
collection_date
2016-12-14
dev_stage
adult
disease
Blunt Force Trauma (BFT)
donor_id
JTK030
ethnicity
Japanese
ihec ref
JTK030
label
IHEC45
lot number
CRIF2L-3
sample_type
Primary Cell
sex
male

Sequenced DNA Library

library_name
WadaLab-IHEC45-C2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37978959
Reads aligned (%)
98.8
Duplicates removed (%)
16.3
Number of peaks
42309 (qval < 1E-05)

hg19

Number of total reads
37978959
Reads aligned (%)
98.4
Duplicates removed (%)
17.1
Number of peaks
42242 (qval < 1E-05)

Base call quality data from DBCLS SRA