DRX114642
HCCA-CRIF2C ChIP-Seq H3K27me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Carotid artery endothelial cells
NA
NA

Attributes by original data submitter

Sample

sample_name
IHEC38-CRIF2C
age
68
biomaterial_provider
Brain Attack Center, Ota Memorial Hospital (Hiroshima, Japan), UT_RCAST
biomaterial_type
Primary Cell
cause of death
Alive,sample from CEA operation
cell ontology
aortic endothelial cells
cell ontology uri
http://purl.obolibrary.org/obo/CL_0002544
cell type abbreviation
HCCA
cell_type
Human Common Carotid Artery
collection_date
2013-10-15
disease
carotid stenosis
disease ontology uri
http://purl.obolibrary.org/obo/DOID_13001
donor_id
JTK026
ethnicity
Japanese
health_state
alive
ihec ref
JTK026
label
IHEC38
lot number
CRIF2C
sample_type
Primary Cell
sex
female
tissue_type
the endothelium of blood vessels
total cell count
unknown
total cell count unit
cell per mili-liter
viability (tripan blue exclusion)
unknown

Sequenced DNA Library

library_name
WadaLab-IHEC38-F1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48404858
Reads aligned (%)
97.5
Duplicates removed (%)
4.5
Number of peaks
816 (qval < 1E-05)

hg19

Number of total reads
48404858
Reads aligned (%)
97.0
Duplicates removed (%)
5.6
Number of peaks
929 (qval < 1E-05)

Base call quality data from DBCLS SRA