DRX114632
HCAEC-03353 ChIP-Seq H3K27ac

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Coronary artery endothelial cells
NA
NA

Attributes by original data submitter

Sample

sample_name
IHEC34-03353
age
14
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD), UT_RCAST
biomaterial_type
Primary Cell
catalog number
FC-0077
cause of death
Anoxia
cell ontology
endothelial cell of coronary artery
cell ontology uri
http://purl.obolibrary.org/obo/CL_2000018
cell type abbreviation
HCAEC
cell_type
Human Coronary Artery Endothelial Cells
collection_date
2013-07-01
donor_id
JTK022
ethnicity
Caucasian
health_state
dead
ihec ref
JTK022
label
IHEC34
lot number
3353
sample_type
Primary Cell
sex
male
tissue_type
the endothelium of blood vessels
total cell count
417500
total cell count unit
cell per mili-liter
viability (tripan blue exclusion)
97%

Sequenced DNA Library

library_name
WadaLab-IHEC34-C3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36832127
Reads aligned (%)
98.4
Duplicates removed (%)
7.0
Number of peaks
58937 (qval < 1E-05)

hg19

Number of total reads
36832127
Reads aligned (%)
98.0
Duplicates removed (%)
7.4
Number of peaks
58858 (qval < 1E-05)

Base call quality data from DBCLS SRA