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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: C2C12
ATCC
MeSH
RIKEN BRC
DRX114228
ATAC-C2C12-H3mm7KO-72h-lot2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS
Attributes by original data submitter
Sample
sample_name
C2C12 H3mm7 KO
cell_line
C2C12
cell_type
adherent; myoblast
Sequenced DNA Library
library_name
ATAC-C2C12-H3mm7KO-72h-lot2
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
Sequencing Platform
instrument_model
Illumina HiSeq 1500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
9091694
Reads aligned (%)
61.1
Duplicates removed (%)
16.4
Number of peaks
1073 (qval < 1E-05)
mm9
Number of total reads
9091694
Reads aligned (%)
61.0
Duplicates removed (%)
16.4
Number of peaks
1064 (qval < 1E-05)
Base call quality data from
DBCLS SRA