DRX100830
Illumina Genome Analyzer IIx sequencing of SAMD00097615

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

sample_name
HL60_H3K4me3_shOGT_6h
cell_line
HL60

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23918731
Reads aligned (%)
95.8
Duplicates removed (%)
3.7
Number of peaks
970 (qval < 1E-05)

hg19

Number of total reads
23918731
Reads aligned (%)
94.9
Duplicates removed (%)
4.5
Number of peaks
936 (qval < 1E-05)

Base call quality data from DBCLS SRA