DRX082983
HAoEC-03345 ChIP-Seq Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
HAEC
Primary Tissue
Aorta
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

sample_name
IHEC33-03345
age
14
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD), UT_RCAST
biomaterial_type
Primary Cell
catalog number
FC-0077
cause of death
Anoxia
cell ontology
aortic endothelial cells
cell ontology uri
http://purl.obolibrary.org/obo/CL_0002544
cell type abbreviation
HAoEC
cell_type
Human Aortic Endothelial Cells
collection_date
2013-07-01
donor_id
JTK021
ethnicity
Caucasian
health_state
dead
ihec ref
JTK021
label
IHEC33
lot number
3345
sample_type
Primary Cell
sex
male
tissue_type
the endothelium of blood vessels
total cell count
287500
total cell count unit
cell per mili-liter
viability (tripan blue exclusion)
92%

Sequenced DNA Library

library_name
WadaLab-IHEC33-INP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
52002917
Reads aligned (%)
99.2
Duplicates removed (%)
3.0
Number of peaks
1544 (qval < 1E-05)

hg19

Number of total reads
52002917
Reads aligned (%)
98.3
Duplicates removed (%)
4.6
Number of peaks
1437 (qval < 1E-05)

Base call quality data from DBCLS SRA