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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: HAEC
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
DRX082982
HAoEC-03324 ChIP-seq Input
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Cardiovascular
Cell type
HAEC
Primary Tissue
Aorta
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
sample_name
DRS014289
age
23
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
catalog number
FC-0077
cause of death
Head trauma
cell ontology
aortic endothelial cells
cell ontology uri
http://purl.obolibrary.org/obo/CL_0002544
cell type abbreviation
HAoEC
cell_type
Human Aortic Endothelial Cells
collection_date
2013-06-01
donor_id
JTK019
ethnicity
African american
health_state
dead
ihec ref
JTK019
label
IHEC31
lot number
3324
sample_type
Primary Cell
sex
male
tissue_type
the endothelium of blood vessels
total cell count
187500
total cell count unit
cell per mili-liter
viability (tripan blue exclusion)
98%
Sequenced DNA Library
library_name
WadaLab-IHEC31-INP3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
39003235
Reads aligned (%)
98.4
Duplicates removed (%)
6.8
Number of peaks
9454 (qval < 1E-05)
hg19
Number of total reads
39003235
Reads aligned (%)
97.9
Duplicates removed (%)
7.6
Number of peaks
10514 (qval < 1E-05)
Base call quality data from
DBCLS SRA