DRX080361
Illumina HiSeq 2500 sequencing of SAMD00073814

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Bone
Cell type
Growth Plate
MeSH Description
The area between the EPIPHYSIS and the DIAPHYSIS within which bone growth occurs.

Attributes by original data submitter

Sample

sample_name
NIG-Sh-15H-019
genotype
MSM
tissue_type
growth plate

Sequenced DNA Library

library_name
Sh2015_19_ATAC_MSM_GP3
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
145433290
Reads aligned (%)
88.9
Duplicates removed (%)
44.5
Number of peaks
58599 (qval < 1E-05)

mm9

Number of total reads
145433290
Reads aligned (%)
88.8
Duplicates removed (%)
44.6
Number of peaks
58662 (qval < 1E-05)

Base call quality data from DBCLS SRA