ChIP-Atlas: DRX069883

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Unclassified
Antigen: Unclassified

Cell type

Cell type Class: Cardiovascular
Cell type: HAEC
Primary Tissue: Aorta
Tissue Diagnosis: Normal

Attributes by original data submitter

Sample

sample_name: DRS014283
age: 26
biomaterial_provider: Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type: Primary Cell
catalog number: FC-0077
cause of death: Anoxia
cell ontology: aortic endothelial cells
cell ontology uri: http://purl.obolibrary.org/obo/CL_0002544
cell type abbreviation: HAoEC
cell_type: Human Aortic Endothelial Cells
collection_date: 2013-05-01
donor_id: JTK013
ethnicity: Caucasian
health_state: dead
ihec ref: JTK013
label: IHEC24
lot number: 3272
sample_type: Primary Cell
sex: male
tissue_type: the endothelium of blood vessels
total cell count: 1995000
total cell count unit: cell per mili-liter
viability (tripan blue exclusion): 95%

Sequenced DNA Library

library_name: WadaLab-IHEC24-E1
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model: Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 65119932
Reads aligned (%): 99.0
Duplicates removed (%): 5.0
Number of peaks: 2012 (qval < 1E-05)

hg19

Number of total reads: 65119932
Reads aligned (%): 98.0
Duplicates removed (%): 6.9
Number of peaks: 1657 (qval < 1E-05)

Base call quality data from DBCLS SRA