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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: Embryonic brains
ATCC
MeSH
RIKEN BRC
DRX061058
Illumina HiSeq 1500 sequencing of SAMD00057617
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA
Attributes by original data submitter
Sample
sample_name
Mouse_E14.5_CHD8hetero
strain
C57/BL6J
tissue_type
Whole brain
age
Embryonic day 14.5
Sequenced DNA Library
library_name
ChIP-seq_E14.5_CHD8hetero_mouse_Whole-Brain_REST_input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 1500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
33986997
Reads aligned (%)
98.8
Duplicates removed (%)
12.3
Number of peaks
268 (qval < 1E-05)
mm9
Number of total reads
33986997
Reads aligned (%)
98.7
Duplicates removed (%)
12.3
Number of peaks
244 (qval < 1E-05)
Base call quality data from
DBCLS SRA