DRX059629
Illumina HiSeq 2500 sequencing of SAMD00055702

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

sample_name
0006_293T-fanChIP-H3K4me3
cell_line
293T

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29878189
Reads aligned (%)
97.2
Duplicates removed (%)
3.1
Number of peaks
7121 (qval < 1E-05)

hg19

Number of total reads
29878189
Reads aligned (%)
96.6
Duplicates removed (%)
4.1
Number of peaks
7021 (qval < 1E-05)

Base call quality data from DBCLS SRA