DRX049458
Illumina HiSeq 2500 sequencing of SAMD00046693

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

sample_name
WT_Neu_H3K4me1_replicate2

Sequenced DNA Library

library_name
WT_Neu_H3K4me1_replicate2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
illumina TruSeq ChIP Sample Prep Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
32412003
Reads aligned (%)
93.2
Duplicates removed (%)
47.8
Number of peaks
202 (qval < 1E-05)

mm9

Number of total reads
32412003
Reads aligned (%)
93.0
Duplicates removed (%)
47.9
Number of peaks
486 (qval < 1E-05)

Base call quality data from DBCLS SRA