DRX048547
HENDC-04553 ChIP-seq H3K36me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Endocardial cells
NA
NA

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC59
age
36
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
cell_type
Human Endocardial Cells
collection_date
2015-03-15
donor_id
JTK039
ethnicity
Native American
health_state
dead
ihec ref
JTK039
label
IHEC59
lot number
4553
sample_type
Primary Cell
sex
female
tissue_type
the endothelium of blood vessels

Sequenced DNA Library

library_name
WadaLab-IHEC59-D1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49854688
Reads aligned (%)
98.7
Duplicates removed (%)
5.0
Number of peaks
1321 (qval < 1E-05)

hg19

Number of total reads
49854688
Reads aligned (%)
98.1
Duplicates removed (%)
6.5
Number of peaks
1418 (qval < 1E-05)

Base call quality data from DBCLS SRA