DRX048532
HCtAEC-NA ChIP-seq H3K36me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Carotid artery endothelial cells
NA
NA

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC55
age
40
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
cell_type
Human Carotid Artery Endothelial Cells
collection_date
2014-05-14
donor_id
JTK035
ethnicity
Caucasian
health_state
dead
ihec ref
JTK035
label
IHEC55
lot number
3970
sample_type
Primary Cell
sex
female
tissue_type
the endothelium of blood vessels

Sequenced DNA Library

library_name
WadaLab-IHEC55-D1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
47600666
Reads aligned (%)
99.1
Duplicates removed (%)
4.7
Number of peaks
1288 (qval < 1E-05)

hg19

Number of total reads
47600666
Reads aligned (%)
98.6
Duplicates removed (%)
6.2
Number of peaks
1251 (qval < 1E-05)

Base call quality data from DBCLS SRA