DRX048529
HENDC-03573 ChIP-seq Input

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Endocardial cells
NA
NA

Attributes by original data submitter

Sample

sample_name
WadaLab-IHEC42
age
23
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
cell_type
Human Endocardial Cells
collection_date
2013-12-13
donor_id
JTK027
ethnicity
Caucasian
health_state
dead
ihec ref
JTK027
label
IHEC42
lot number
3664
sample_type
Primary Cell
sex
male
tissue_type
the endothelium of blood vessels

Sequenced DNA Library

library_name
WadaLab-IHEC42-INP2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43804111
Reads aligned (%)
99.1
Duplicates removed (%)
6.1
Number of peaks
1401 (qval < 1E-05)

hg19

Number of total reads
43804111
Reads aligned (%)
98.3
Duplicates removed (%)
7.7
Number of peaks
1274 (qval < 1E-05)

Base call quality data from DBCLS SRA