DRX048508
HCAEC-03274 ChIP-seq H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Cardiovascular
Cell type
Coronary artery endothelial cells
NA
NA

Attributes by original data submitter

Sample

sample_name
DRS014285
age
26
biomaterial_provider
Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type
Primary Cell
catalog number
FC-0077
cause of death
Anoxia
cell ontology
endothelial cell of coronary artery
cell ontology uri
http://purl.obolibrary.org/obo/CL_2000018
cell type abbreviation
HCAEC
cell_type
Human Coronary Artery Endothelial Cells
collection_date
2013-05-01
donor_id
JTK015
ethnicity
Caucasian
health_state
dead
ihec ref
JTK015
label
IHEC26
lot number
3274
sample_type
Primary Cell
sex
male
tissue_type
the endothelium of blood vessels
total cell count
702500
total cell count unit
cell per mili-liter
viability (tripan blue exclusion)
82%

Sequenced DNA Library

library_name
WadaLab-IHEC26-B3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44207784
Reads aligned (%)
99.0
Duplicates removed (%)
6.6
Number of peaks
17811 (qval < 1E-05)

hg19

Number of total reads
44207784
Reads aligned (%)
98.5
Duplicates removed (%)
7.9
Number of peaks
17714 (qval < 1E-05)

Base call quality data from DBCLS SRA