DRX048491
Illumina HiSeq 2500 sequencing of SAMD00045834

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

sample_name
KimuraLab-IMR90
biomaterial_provider
ATCC
biomaterial_type
Primary Cell
cell_line
IMR-90
cell_type
Homo sapiens lung normal
culture_collection
ATCC:CCL-186
label
IMR-90
tissue_type
lung

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
52094596
Reads aligned (%)
99.1
Duplicates removed (%)
5.6
Number of peaks
1953 (qval < 1E-05)

hg19

Number of total reads
52094596
Reads aligned (%)
98.4
Duplicates removed (%)
6.7
Number of peaks
1722 (qval < 1E-05)

Base call quality data from DBCLS SRA