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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: Dorsal telencephalon
ATCC
MeSH
RIKEN BRC
DRX048176
0503-D-H3K27me3
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Neural
Cell type
Dorsal telencephalon
NA
NA
Attributes by original data submitter
Sample
sample_name
dtel-WT
strain
ICR
tissue_type
The dorsal telencephalon
age
E12.5
genotype
wild-type
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 1500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
39393856
Reads aligned (%)
98.4
Duplicates removed (%)
11.0
Number of peaks
402 (qval < 1E-05)
mm9
Number of total reads
39393856
Reads aligned (%)
98.2
Duplicates removed (%)
11.0
Number of peaks
428 (qval < 1E-05)
Base call quality data from
DBCLS SRA