Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

sample_name
004_ED_ChIP_CTCF_2
collection_date
2015-03-18
cell_line
ED cells
cell_type
T cell
replicate
biological replicate 2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
38944220
Reads aligned (%)
80.7
Duplicates removed (%)
13.8
Number of peaks
33272 (qval < 1E-05)

hg38

Number of total reads
38944220
Reads aligned (%)
83.3
Duplicates removed (%)
11.9
Number of peaks
33923 (qval < 1E-05)

Base call quality data from DBCLS SRA