DRX041635
Illumina HiSeq 2500 paired end sequencing of SAMD00040618

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Bisulfite-Seq
Antigen
Bisulfite-Seq

Cell type

Cell type Class
Gonad
Cell type
Germinal vesicle oocytes
NA
NA

Attributes by original data submitter

Sample

sample_name
07_FGO_sc.2
strain
C57BL/6N
biomaterial_provider
Clea Japan
age
9 weeks
cell_type
Full-grown oocytes
dev_stage
Germinal vesicle stage (GV) oocytes
sex
female

Sequenced DNA Library

library_name
Single-cell FGO #2
library_strategy
Bisulfite-Seq
library_source
GENOMIC
library_selection
RANDOM
library_construction_protocol
The amplification-free multiplexed post-bisulfite adapter tagging (PBAT) protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
3583911
Reads aligned (%)
16.4
Coverage rate (×)
0.0
Number of hyper MRs
5053 (qval < 1E-05)

mm9

Number of total reads
3583911
Reads aligned (%)
16.7
Coverage rate (×)
0.0
Number of hyper MRs
5052 (qval < 1E-05)

Base call quality data from DBCLS SRA