DRX040355
Illumina HiSeq 1500 sequencing of SAMD00039226

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3.Y

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
HeLa H3.Y-GFP
cell_line
HeLa

Sequenced DNA Library

library_name
ChIP-Seq HeLa GFP-H3.Y
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45427277
Reads aligned (%)
98.7
Duplicates removed (%)
58.1
Number of peaks
514 (qval < 1E-05)

hg19

Number of total reads
45427277
Reads aligned (%)
98.0
Duplicates removed (%)
59.6
Number of peaks
528 (qval < 1E-05)

Base call quality data from DBCLS SRA