DRX021716
Illumina HiSeq 2000 sequencing of SAMD00020931

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Granulocytic-monocytic progenitors
NA
NA

Attributes by original data submitter

Sample

sample_name
GMPs from WT input for for H3K9me3
strain
C57BL/6NCr
collection_date
2013-11-05
age
12 weeks
sex
female
cell_type
Lineage- c-kit+ Sca-1- FcgR+ CD34+ fraction from transplanted Eset w/w Cre-ERT cells
tissue_type
adult bone marrow

Sequenced DNA Library

library_name
GMPs from WT input for for H3K9me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
63822717
Reads aligned (%)
96.1
Duplicates removed (%)
15.0
Number of peaks
774 (qval < 1E-05)

mm9

Number of total reads
63822717
Reads aligned (%)
95.8
Duplicates removed (%)
14.9
Number of peaks
888 (qval < 1E-05)

Base call quality data from DBCLS SRA