Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Gonad
Cell type
Testis
MeSH Description
The male gonad containing two functional parts: the SEMINIFEROUS TUBULES for the production and transport of male germ cells (SPERMATOGENESIS) and the interstitial compartment containing LEYDIG CELLS that produce ANDROGENS.

Attributes by original data submitter

Sample

sample_name
Human testis

Sequenced DNA Library

library_name
ChIP-Seq human-testis input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1500

hg38

Number of total reads
37152766
Reads aligned (%)
98.9
Duplicates removed (%)
4.2
Number of peaks
1000 (qval < 1E-05)

hg19

Number of total reads
37152766
Reads aligned (%)
98.0
Duplicates removed (%)
5.7
Number of peaks
1066 (qval < 1E-05)

Base call quality data from DBCLS SRA