Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MBD1

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

sample_name
HCT116 MBD1 (-8-3-10)
cell_line
HCT116

Sequenced DNA Library

library_name
HCT116 MBD1 (-8-3-10)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
38008386
Reads aligned (%)
3.4
Duplicates removed (%)
79.1
Number of peaks
24029 (qval < 1E-05)

hg38

Number of total reads
38008386
Reads aligned (%)
3.5
Duplicates removed (%)
78.5
Number of peaks
24191 (qval < 1E-05)

Base call quality data from DBCLS SRA