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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: MBD1
wikigenes
PDBj
CellType: HCT 116
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
DRX021118
Illumina Genome Analyzer IIx sequencing of SAMD00020001
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
MBD1
Cell type
Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
sample_name
HCT116 MBD1 (-8-3-10)
cell_line
HCT116
Sequenced DNA Library
library_name
HCT116 MBD1 (-8-3-10)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
38008386
Reads aligned (%)
16.3
Duplicates removed (%)
78.5
Number of peaks
24191 (qval < 1E-05)
hg19
Number of total reads
38008386
Reads aligned (%)
16.2
Duplicates removed (%)
79.1
Number of peaks
24029 (qval < 1E-05)
Base call quality data from
DBCLS SRA