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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: 293
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
DRX021115
Illumina Genome Analyzer IIx sequencing of SAMD00020000
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
sample_name
293T MeTA input (-7-29-11)
cell_line
HEK293
Sequenced DNA Library
library_name
293T MeTA input (-7-29-11)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
34622229
Reads aligned (%)
45.2
Duplicates removed (%)
35.8
Number of peaks
160 (qval < 1E-05)
hg19
Number of total reads
34622229
Reads aligned (%)
44.7
Duplicates removed (%)
36.3
Number of peaks
167 (qval < 1E-05)
Base call quality data from
DBCLS SRA