DRX020614
PAX6 03

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Uterus
Cell type
TC-YIK
Primary Tissue
Cervix
Tissue Diagnosis
Unknown

Attributes by original data submitter

Sample

sample_name
DRS007724
age
31
sex
female
disease
argyrophil small cell carcinoma
rna_od_260_280
2.11
rna_sample_type
total RNA
sample comment
argyrophil small cell carcinoma cell line:TC-YIK
sample_provider
Yukio Nakamura (RIKEN BRC)
Ontology ID
FF:10589-108D4
tissue
cervix
cell_catalog
RCB0443
cell_line
TC-YIK
cell_type
unclassifiable
company
RIKEN Bioresource centre
ethnicity
J
rna_extraction_protocol
OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
rna_od_260_230
1.85

Sequenced DNA Library

library_name
PShi10213.001.GCCAAT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
85996854
Reads aligned (%)
98.9
Duplicates removed (%)
24.2
Number of peaks
16195 (qval < 1E-05)

hg19

Number of total reads
85996854
Reads aligned (%)
97.9
Duplicates removed (%)
25.8
Number of peaks
15948 (qval < 1E-05)

Base call quality data from DBCLS SRA