DRX015409
RERF-LC-Ad2 H3K4me1 [ChIPseq]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Lung
Cell type
RERF-LC-Ad2
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
DRS014899
sample comment
RERF-LC-Ad2 lung adenocarcinoma cell lines; ChIPseq; anti-H3K4me1 (ab8895 GR114297-1, abcam);

Sequenced DNA Library

library_name
RERF-LC-Ad2 H3K4me1 [ChIPseq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45779979
Reads aligned (%)
98.0
Duplicates removed (%)
6.5
Number of peaks
75818 (qval < 1E-05)

hg19

Number of total reads
45779979
Reads aligned (%)
97.7
Duplicates removed (%)
6.7
Number of peaks
75744 (qval < 1E-05)

Base call quality data from DBCLS SRA