DRX015372
PC-3 H3K4me3 [ChIPseq]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
DRS014862
sample comment
PC-3 lung adenocarcinoma cell lines; ChIPseq; anti-H3K4me3 (ab1012 GR7751-1/GR80367-1, abcam);

Sequenced DNA Library

library_name
PC-3 H3K4me3 [ChIPseq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28476055
Reads aligned (%)
96.8
Duplicates removed (%)
25.8
Number of peaks
26564 (qval < 1E-05)

hg19

Number of total reads
28476055
Reads aligned (%)
96.6
Duplicates removed (%)
26.0
Number of peaks
26417 (qval < 1E-05)

Base call quality data from DBCLS SRA