DRX015346
II-18 H3K4me1 [ChIPseq]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Lung
Cell type
II-18
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
DRS014836
sample comment
II-18 lung adenocarcinoma cell lines; ChIPseq; anti-H3K4me1 (ab8895 GR114297-1, abcam);

Sequenced DNA Library

library_name
II-18 H3K4me1 [ChIPseq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24656930
Reads aligned (%)
94.3
Duplicates removed (%)
9.4
Number of peaks
40640 (qval < 1E-05)

hg19

Number of total reads
24656930
Reads aligned (%)
94.1
Duplicates removed (%)
9.8
Number of peaks
40609 (qval < 1E-05)

Base call quality data from DBCLS SRA