DRX015318
H2228 H3K4me3 [ChIPseq]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
NCI-H2228
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Non-Small Cell

Attributes by original data submitter

Sample

sample_name
DRS014808
sample comment
H2228 lung adenocarcinoma cell lines; ChIPseq; anti-H3K4me3 (ab1012 GR7751-1/GR80367-1, abcam);

Sequenced DNA Library

library_name
H2228 H3K4me3 [ChIPseq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19630977
Reads aligned (%)
95.8
Duplicates removed (%)
22.7
Number of peaks
26064 (qval < 1E-05)

hg19

Number of total reads
19630977
Reads aligned (%)
95.6
Duplicates removed (%)
22.9
Number of peaks
26000 (qval < 1E-05)

Base call quality data from DBCLS SRA