DRX015228
A549 H3K4me3 [ChIPseq]

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

sample_name
DRS014718
sample comment
A549 lung adenocarcinoma cell lines; ChIPseq; anti-H3K4me3 (ab1012 GR7751-1/GR80367-1, abcam);

Sequenced DNA Library

library_name
A549 H3K4me3 [ChIPseq]
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29771386
Reads aligned (%)
97.6
Duplicates removed (%)
48.8
Number of peaks
22210 (qval < 1E-05)

hg19

Number of total reads
29771386
Reads aligned (%)
97.4
Duplicates removed (%)
49.0
Number of peaks
22157 (qval < 1E-05)

Base call quality data from DBCLS SRA