ChIP-Atlas: DRX014711

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Unclassified
Antigen: Unclassified

Cell type

Cell type Class: Cardiovascular
Cell type: Umbilical artery endothelial cells
NA: NA

Attributes by original data submitter

Sample

sample_name: DRS014286
age: newborn
biomaterial_provider: Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type: Primary Cell
catalog number: FC-0077
cause of death: Alive
cell ontology: endothelial cell of umbilical artery
cell ontology uri: http://purl.obolibrary.org/obo/CL_0010002
cell type abbreviation: HUAEC
cell_type: Human Umbilical Artery Endothelial Cells
collection_date: 2013-06-01
donor_id: JTK016
ethnicity: Caucasian
health_state: alive
ihec ref: JTK016
label: IHEC28
lot number: 3290
sample_type: Primary Cell
sex: male
tissue_type: the endothelium of blood vessels
total cell count: 355000
total cell count unit: cell per mili-liter
viability (tripan blue exclusion): 98%

Sequenced DNA Library

library_name: WadaLab-IHEC28-INP1
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model: Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 49690056
Reads aligned (%): 99.2
Duplicates removed (%): 4.2
Number of peaks: 1404 (qval < 1E-05)

hg19

Number of total reads: 49690056
Reads aligned (%): 98.4
Duplicates removed (%): 5.8
Number of peaks: 1384 (qval < 1E-05)

Base call quality data from DBCLS SRA