ChIP-Atlas: DRX014589

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Unclassified
Antigen: Unclassified

Cell type

Cell type Class: Cardiovascular
Cell type: Coronary artery endothelial cells
NA: NA

Attributes by original data submitter

Sample

sample_name: DRS014274
age: 30
biomaterial_provider: Lonza Walkersville, Inc (Walkersville, MD)
biomaterial_type: Primary Cell
catalog number: FC-0077
cause of death: Pneumonia
cell ontology: endothelial cell of coronary artery
cell ontology uri: http://purl.obolibrary.org/obo/CL_2000018
cell type abbreviation: HCAEC
cell_type: Human Coronary Artery Endothelial Cells
collection_date: 2013-03-01
disease: pneumonia
disease ontology uri: http://purl.obolibrary.org/obo/DOID_552
donor_id: JTK004
ethnicity: Caucasian
health_state: dead
ihec ref: JTK004
label: IHEC15
lot number: 3121
sample_type: Primary Cell
sex: female
tissue_type: the endothelium of blood vessels
total cell count: 305000
total cell count unit: cell per mili-liter
viability (tripan blue exclusion): 93%

Sequenced DNA Library

library_name: WadaLab-IHEC15-C1
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: Sequencing library was constructed following the Illumina protocol

Sequencing Platform

instrument_model: Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 46569879
Reads aligned (%): 36.0
Duplicates removed (%): 66.3
Number of peaks: 15413 (qval < 1E-05)

hg19

Number of total reads: 46569879
Reads aligned (%): 35.9
Duplicates removed (%): 66.6
Number of peaks: 15386 (qval < 1E-05)

Base call quality data from DBCLS SRA