Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
EpiSC
NA
NA

Attributes by original data submitter

Sample

sample_name
DRS013088
sample comment
EpiSC cells were cultured on murine fibroblast feeders in DMEM/F12 supplemented with 20% KSR, bFGF, nonessential amino acids, b-mercaptoethanol, L-glutamax, penicillin, and streptomycin.ChIP experiment with whole cell extract was performed as we have described previously. Samples destined for ChIP seq by Illumina HiSeq were prepared according to the manufacturer’s instructions.

Sequenced DNA Library

library_name
ChIP_mEpi_WCE
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
160159295
Reads aligned (%)
79.5
Duplicates removed (%)
66.6
Number of peaks
1852 (qval < 1E-05)

mm9

Number of total reads
160159295
Reads aligned (%)
79.5
Duplicates removed (%)
66.6
Number of peaks
1823 (qval < 1E-05)

Base call quality data from DBCLS SRA