Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K9me2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
EpiSC
NA
NA

Attributes by original data submitter

Sample

sample_name
DRS013079
sample comment
EpiSC cells were cultured on murine fibroblast feeders in DMEM/F12 supplemented with 20% KSR, bFGF, nonessential amino acids, b-mercaptoethanol, L-glutamax, penicillin, and streptomycin.ChIP experiment with anti-H3K9me2 antibody was performed as we have described previously. Samples destined for ChIP seq by Illumina HiSeq were prepared according to the manufacturer’s instructions.

Sequenced DNA Library

library_name
Epi-H3K9me2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
66014072
Reads aligned (%)
85.3
Duplicates removed (%)
62.6
Number of peaks
1098 (qval < 1E-05)

mm9

Number of total reads
66014072
Reads aligned (%)
85.3
Duplicates removed (%)
62.7
Number of peaks
1153 (qval < 1E-05)

Base call quality data from DBCLS SRA