Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Digestive tract
Cell type
DLD-1
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
DRS012979
sample comment
ChIP seq library. DLD-1 cell line,CTCF IP

Sequenced DNA Library

library_name
DLD1 CTCF
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
52061955
Reads aligned (%)
67.4
Duplicates removed (%)
27.9
Number of peaks
36314 (qval < 1E-05)

hg38

Number of total reads
52061955
Reads aligned (%)
69.4
Duplicates removed (%)
26.4
Number of peaks
36512 (qval < 1E-05)

Base call quality data from DBCLS SRA