DRX013175
DLD1 H3K4me3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Digestive tract
Cell type
DLD-1
Primary Tissue
Colon
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

sample_name
DRS012974
sample comment
ChIP seq library. DLD-1 cell line, H3K4me3 IP

Sequenced DNA Library

library_name
DLD1 H3K4me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34102118
Reads aligned (%)
51.7
Duplicates removed (%)
69.9
Number of peaks
22663 (qval < 1E-05)

hg19

Number of total reads
34102118
Reads aligned (%)
51.4
Duplicates removed (%)
70.1
Number of peaks
23244 (qval < 1E-05)

Base call quality data from DBCLS SRA