Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ZHBTc4
NA
NA

Attributes by original data submitter

Sample

sample_name
DRS011875
sample comment
ZHBTc4 is derived from ZHTc6 and maintained by tetracycline (Tc)-regulatable Oct-3/4 transgene. Both of Oct-3/4 locus are disrupted by IRES-zeocin and IRES-BSD KO vectors. It should be cultured in the absence of tetraycline to maintain the undifferentiated state.

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
35459681
Reads aligned (%)
85.7
Duplicates removed (%)
21.2
Number of peaks
54181 (qval < 1E-05)

mm9

Number of total reads
35459681
Reads aligned (%)
85.5
Duplicates removed (%)
21.3
Number of peaks
54098 (qval < 1E-05)

Base call quality data from DBCLS SRA