Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

sample_name

DRS011798

sample comment

Mice were entrained to 12-hr light (L) and 12-hr dark (D) cycles for at least 2 weeks in a light-tight chamber at a constant temperature (23 ± 1°C). The mice were sacrificed at different time for liver isolation. Nuclear extracts of the mouse liver were cross-linked by 1% formaldehyde, and then sonicated. The samples were used for ChIP with CLSP4 anti-CLOCK antibody. For control experiment, the DNA prepared by ChIP with 1D4 antibody and input DNA were also sequenced.

Strain

C57BL/6J

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

mm10

Number of total reads

38006035

Reads aligned (%)

94.6

Duplicates removed (%)

26.7

Number of peaks

679 (qval < 1E-05)

mm9

Number of total reads

38006035

Reads aligned (%)

94.3

Duplicates removed (%)

26.7

Number of peaks

768 (qval < 1E-05)