Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

sample_name

DRS011792

sample comment

Mice were entrained to 12-hr light (L) and 12-hr dark (D) cycles for at least 2 weeks in a light-tight chamber at a constant temperature (23 ± 1°C). The LD entrained mice were transferred to constant darkness, and in the second day, the mice were sacrificed at different time for liver isolation. Nuclear extracts of the mouse liver were cross-linked by 1% formaldehyde, and then sonicated. The samples were used for ChIP with CLSP4 anti-CLOCK antibody. For control experiment, the DNA prepared by ChIP with 1D4 antibody and input DNA were also sequenced.

Strain

C57BL/6J

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer IIx

mm10

Number of total reads

37015953

Reads aligned (%)

95.3

Duplicates removed (%)

35.8

Number of peaks

683 (qval < 1E-05)

mm9

Number of total reads

37015953

Reads aligned (%)

95.1

Duplicates removed (%)

35.9

Number of peaks

783 (qval < 1E-05)