Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3.1

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

sample_name
DRS009157
sample comment
0.5% formaldehyde 5min fixationThe Hist1h3a (purchased from Operon Biotechnologies) used for expression of H3.1 . The cDNA were ligated into the Bidirectional Tet Expression Vector pT2A-TRETIBI (modified Clontech Tet-On system), which contains TolII transposon elements and EGFP cDNA located upstream of the cDNA sequence and which was modified from pT2AL200R150G (provided by Dr. Kawakami). The pT2A-TRETIBI/EGFP-H3.1 transfection was performed using Lipofectamine 2000 reagent (Life Technologies, Carlsbad, CA). C2C12 cells at 20% to 30% confluence were transfected with an expression vector, pCAGGS-TP coding transposase (provided by Dr. Kawakami), and pT2A-CAG-rtTA2S-M2 and incubated for 24 h. To create cell lines stably expressing GFP-H3.1 , transfected cells were cultured for 14-21 days in the presence of doxycycline and G418. Finally, the GFP positive cells in the stable lines were selected using fluorescence activating cell-sorting.

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 1000

mm10

Number of total reads
48867365
Reads aligned (%)
98.2
Duplicates removed (%)
11.3
Number of peaks
340 (qval < 1E-05)

mm9

Number of total reads
48867365
Reads aligned (%)
98.0
Duplicates removed (%)
11.3
Number of peaks
333 (qval < 1E-05)

Base call quality data from DBCLS SRA